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- Metadata-Version: 2.4
- Name: pysam
- Version: 0.23.3
- Summary: Package for reading, manipulating, and writing genomic data
- Home-page: https://github.com/pysam-developers/pysam
- Author: Andreas Heger
- Author-email: Andreas Heger <andreas.heger@gmail.com>
- License: MIT License
- Project-URL: Documentation, https://pysam.readthedocs.io/
- Project-URL: Release notes, https://pysam.readthedocs.io/en/stable/release.html
- Platform: POSIX
- Platform: UNIX
- Platform: MacOS
- Classifier: Development Status :: 4 - Beta
- Classifier: Intended Audience :: Science/Research
- Classifier: Intended Audience :: Developers
- Classifier: License :: OSI Approved
- Classifier: Programming Language :: Python
- Classifier: Topic :: Software Development
- Classifier: Topic :: Scientific/Engineering
- Classifier: Operating System :: POSIX
- Classifier: Operating System :: Unix
- Classifier: Operating System :: MacOS
- Requires-Python: >=3.8
- Description-Content-Type: text/x-rst
- License-File: COPYING
- License-File: AUTHORS
- Dynamic: author
- Dynamic: classifier
- Dynamic: description
- Dynamic: description-content-type
- Dynamic: home-page
- Dynamic: license-file
- Dynamic: platform
-
- pysam --- a Python package for reading, manipulating, and writing
- genomic data sets.
-
- pysam is a lightweight wrapper of the HTSlib API and provides facilities
- to read and write SAM/BAM/CRAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files
- as well as access to the command-line functionality of samtools and bcftools.
- The module supports compression and random access through indexing.
-
- This module provides a low-level wrapper around HTSlib's C API using Cython
- and a high-level API for convenient access to the data within standard genomic
- file formats.
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