Metadata-Version: 2.4
Name: pysam
Version: 0.23.3
Summary: Package for reading, manipulating, and writing genomic data
Home-page: https://github.com/pysam-developers/pysam
Author: Andreas Heger
Author-email: Andreas Heger <andreas.heger@gmail.com>
License: MIT License
Project-URL: Documentation, https://pysam.readthedocs.io/
Project-URL: Release notes, https://pysam.readthedocs.io/en/stable/release.html
Platform: POSIX
Platform: UNIX
Platform: MacOS
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved
Classifier: Programming Language :: Python
Classifier: Topic :: Software Development
Classifier: Topic :: Scientific/Engineering
Classifier: Operating System :: POSIX
Classifier: Operating System :: Unix
Classifier: Operating System :: MacOS
Requires-Python: >=3.8
Description-Content-Type: text/x-rst
License-File: COPYING
License-File: AUTHORS
Dynamic: author
Dynamic: classifier
Dynamic: description
Dynamic: description-content-type
Dynamic: home-page
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pysam --- a Python package for reading, manipulating, and writing
genomic data sets.

pysam is a lightweight wrapper of the HTSlib API and provides facilities
to read and write SAM/BAM/CRAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files
as well as access to the command-line functionality of samtools and bcftools.
The module supports compression and random access through indexing.

This module provides a low-level wrapper around HTSlib's C API using Cython
and a high-level API for convenient access to the data within standard genomic
file formats.