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res_levis_API/lib/python3.6/site-packages/pysam/bcftools.py

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  1. from pysam.utils import PysamDispatcher

  2. 

  3. BCFTOOLS_DISPATCH = [

  4.     "index",

  5.     "annotate",

  6.     "concat",

  7.     "convert",

  8.     "isec",

  9.     "merge",

  10.     "norm",

  11.     "plugin",

  12.     "query",

  13.     "reheader",

  14.     "sort",

  15.     "view",

  16.     "call",

  17.     "consensus",

  18.     "cnv",

  19.     "csq",

  20.     "filter",

  21.     "gtcheck",

  22.     "mpileup",

  23.     "roh",

  24.     "stats"]

  25. 

  26. # instantiate bcftools commands as python functions

  27. for cmd in BCFTOOLS_DISPATCH:

  28.     globals()[cmd] = PysamDispatcher("bcftools", cmd, None)