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- #cdef extern from "Python.h":
- # ctypedef struct FILE
-
- from libc.stdint cimport uint8_t, int32_t, uint32_t, int64_t, uint64_t
-
- cdef class TupleProxy:
-
- cdef:
- char * data
- char ** fields
- int nfields
- int nbytes
- int offset
- bint is_modified
-
- cdef encoding
-
- cpdef int getMaxFields(self)
- cpdef int getMinFields(self)
- # cdef char * _getindex(self, int idx)
-
- cdef take(self, char * buffer, size_t nbytes)
- cdef present(self, char * buffer, size_t nbytes)
- cdef copy(self, char * buffer, size_t nbytes, bint reset=*)
- cdef update(self, char * buffer, size_t nbytes)
-
-
- cdef class TupleProxyIterator:
- cdef TupleProxy proxy
- cdef int index
-
-
- cdef class NamedTupleProxy(TupleProxy):
- pass
-
-
- cdef class GTFProxy(NamedTupleProxy):
- cdef object attribute_dict
- cpdef int getMaxFields(self)
- cpdef int getMinFields(self)
-
-
- cdef class GFF3Proxy(GTFProxy):
- pass
-
-
- cdef class BedProxy(NamedTupleProxy):
-
- cdef:
- char * contig
- uint32_t start
- uint32_t end
- int bedfields
-
- cpdef int getMaxFields(self)
- cpdef int getMinFields(self)
- cdef update(self, char * buffer, size_t nbytes)
-
- cdef class VCFProxy(NamedTupleProxy) :
-
- cdef:
- char * contig
- uint32_t pos
-
- cdef update(self, char * buffer, size_t nbytes)
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