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res_levis_API/.venv/lib/python3.10/site-packages/pysam/bcftools.py

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  1. import pysam.utils

  2. 

  3. annotate = pysam.utils.PysamDispatcher('bcftools', 'annotate')

  4. call = pysam.utils.PysamDispatcher('bcftools', 'call')

  5. cnv = pysam.utils.PysamDispatcher('bcftools', 'cnv')

  6. concat = pysam.utils.PysamDispatcher('bcftools', 'concat')

  7. consensus = pysam.utils.PysamDispatcher('bcftools', 'consensus')

  8. convert = pysam.utils.PysamDispatcher('bcftools', 'convert')

  9. csq = pysam.utils.PysamDispatcher('bcftools', 'csq')

  10. filter = pysam.utils.PysamDispatcher('bcftools', 'filter')

  11. gtcheck = pysam.utils.PysamDispatcher('bcftools', 'gtcheck')

  12. head = pysam.utils.PysamDispatcher('bcftools', 'head')

  13. index = pysam.utils.PysamDispatcher('bcftools', 'index')

  14. isec = pysam.utils.PysamDispatcher('bcftools', 'isec')

  15. merge = pysam.utils.PysamDispatcher('bcftools', 'merge')

  16. mpileup = pysam.utils.PysamDispatcher('bcftools', 'mpileup')

  17. norm = pysam.utils.PysamDispatcher('bcftools', 'norm')

  18. plugin = pysam.utils.PysamDispatcher('bcftools', 'plugin')

  19. query = pysam.utils.PysamDispatcher('bcftools', 'query')

  20. reheader = pysam.utils.PysamDispatcher('bcftools', 'reheader')

  21. roh = pysam.utils.PysamDispatcher('bcftools', 'roh')

  22. sort = pysam.utils.PysamDispatcher('bcftools', 'sort')

  23. stats = pysam.utils.PysamDispatcher('bcftools', 'stats')

  24. view = pysam.utils.PysamDispatcher('bcftools', 'view')

  25. 

  26. __all__ = [

  27.     'annotate', 'call', 'cnv', 'concat', 'consensus',

  28.     'convert', 'csq', 'filter', 'gtcheck', 'head',

  29.     'index', 'isec', 'merge', 'mpileup', 'norm',

  30.     'plugin', 'query', 'reheader', 'roh', 'sort',

  31.     'stats', 'view',

  32. ]