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- #ifndef samtools_PYSAM_H
- #define samtools_PYSAM_H
-
- #include <stdio.h>
-
- #ifndef __has_attribute
- #define __has_attribute(attribute) 0
- #endif
- #ifndef PYSAM_NORETURN
- #if __has_attribute(__noreturn__) || __GNUC__ >= 3
- #define PYSAM_NORETURN __attribute__((__noreturn__))
- #else
- #define PYSAM_NORETURN
- #endif
- #endif
-
- extern FILE * samtools_stderr;
-
- extern FILE * samtools_stdout;
-
- extern const char * samtools_stdout_fn;
-
- /*! set pysam standard error to point to file descriptor
-
- Setting the stderr will close the previous stderr.
- */
- FILE * samtools_set_stderr(int fd);
-
- /*! set pysam standard output to point to file descriptor
-
- Setting the stdout will close the previous stdout.
- */
- FILE * samtools_set_stdout(int fd);
-
- /*! set pysam standard output to point to filename
-
- */
- void samtools_set_stdout_fn(const char * fn);
-
- /*! close pysam standard error and set to NULL
-
- */
- void samtools_close_stderr(void);
-
- /*! close pysam standard output and set to NULL
-
- */
- void samtools_close_stdout(void);
-
- int samtools_puts(const char *s);
-
- int samtools_dispatch(int argc, char *argv[]);
-
- void PYSAM_NORETURN samtools_exit(int status);
-
- void samtools_set_optind(int);
-
- extern int samtools_main(int argc, char *argv[]);
-
- #endif
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