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- /* sample.h -- group data by sample.
-
- Copyright (C) 2010 Broad Institute.
-
- Author: Heng Li <lh3@sanger.ac.uk>
-
- Permission is hereby granted, free of charge, to any person obtaining a copy
- of this software and associated documentation files (the "Software"), to deal
- in the Software without restriction, including without limitation the rights
- to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
- copies of the Software, and to permit persons to whom the Software is
- furnished to do so, subject to the following conditions:
-
- The above copyright notice and this permission notice shall be included in
- all copies or substantial portions of the Software.
-
- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
- IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
- FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
- THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
- LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
- FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
- DEALINGS IN THE SOFTWARE. */
-
- #ifndef BAM_SAMPLE_H
- #define BAM_SAMPLE_H
-
- #include "htslib/kstring.h"
-
- typedef struct {
- int n, m;
- char **smpl;
- void *rg2smid, *sm2id;
- } bam_sample_t;
-
- bam_sample_t *bam_smpl_init(void);
- int bam_smpl_add(bam_sample_t *sm, const char *abs, const char *txt);
- int bam_smpl_rg2smid(const bam_sample_t *sm, const char *fn, const char *rg, kstring_t *str);
- void bam_smpl_destroy(bam_sample_t *sm);
-
- #endif
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